Transcription Factor Browser

Detailed Locus Information for CNAG_07411T0
Species Cryptococcus neoformans var. grubii H99
Gene Annotation histone demethylase JARID1
Gene Name RUM1
TF Family Name Transcription factor jumonji (Classification based on Fungal Transcription Factor DB)
KEGG Linkout  KEGG::CND05870    
Genome Browser JBrowse link goes here. Sequence information also available from JBrowse.
Functional Annotation
KEGG Annotation
KO AccessionE-valueScore
K11446 01079.3
K11446 085.9
Pfam Annotation
Pfam AccessionE-valueScore
PF02373 7.7e-39131.5
PF02375 1.6e-1863.5
PF08429 1.9e-53179.9
Expression Data

Notation Condition Normalized Raw Expression
AYPD 30°C, concentration: 2x 10^8 cells/ml 17,767
BYPD 30°C, concentration: 5x10^7 cells/ml 8,124
CYPD 30°C, fluconazole treatment, concentration: 5x10^7 cells/ml 8,596
DYPD 30°C, SDS 0.01% treatment, concentration: 5x10^7 cells/ml 8,409
EYPD 37°C, concentration: 5x10^7 cells/ml 8,893
FYP+galactose 30°C, concentration: 2x10^8 cells/ml 14,401
Gene Disruption Strategy
Primer NamePrimer DescriptionSequence
L15' flanking region primer 1AGACCCGCCAAAACAATC
L25' flanking region primer 2CTGGCCGTCGTTTTACTTGGACCTACGCTGACTTC
POSouthern blot probe primerTACGAGGATTGAGTCTGGC
R13' flanking region primer 1GTCATAGCTGTTTCCTGGACTTGCGTTCTGATTTTGG
R23' flanking region primer 2GCTGTTATCAAGAGAATGCC
SOdiagnostic screening primer, pairing with B79ACGACTGGCTATCAAGCAG
Phenotype Assays
Growth
Mating Data
Virulence Factor Production
Capsule Urease
Melanin
Stress Response and Adaptation
Osmotic Stress
Oxidative Stress Heavy Metal Stress
Cell Wall Stress
Antifungal Drug Susceptibility
Virulence Data by the Insect Host Model (Galleria mellonella)
Lung Infectivity Data by the Signature-tag Mutagenesis-based Murine Host Model